rs30374194 SNP Detail

Summary

• ID
  rs30374194
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108684774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCA AAACATGCTT TTTAAACCTC
  M
  TGTGTTCAGT CCCTACCCTA TCAGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46400017	mCV25034495	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	C
ss136953268	ENSMUSSNP6057086	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss323192889	CHEV_9_108709906	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30374194					SNP	A	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108684774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22353	CpG island 22353	326 bp proximal
Ip6k2	inositol hexaphosphate kinase 2	1238 bp downstream
Nckipsd	NCK interacting protein with SH3 domain	793 bp upstream
Rr192618	regulatory region 192618	227 bp proximal
Rr205762	regulatory region 205762	226 bp proximal
Tssr87162	transcription start site region 87162	765 bp upstream
Tssr87163	transcription start site region 87163	781 bp upstream