rs30374389 SNP Detail

Summary

• ID
  rs30374389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67199793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACATGC TTATTGACTG
  AAGAAAACAT CTCATCTTCT AGGACTTGTG AATAGAACCC AGACGGCCTC CAAAGGTTTA
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTAACA GTCTAAATGA
  ACCCTCATCT ATTGAGTCCT TTCTGGTCTT CCCTGAAGTT TTTATCTGGC TTAATTTGTA
  R
  GAGAGGACAT TCAGTTACTG GAGCAAACTC AAAATCCAAA CTACAACCAC CAAGTAACAA
  AACCTTCAAT ATTCATAGGA GAATTTACAG TAAAACAAAC AAACAAAAAA GCAAACTGCA
  CAAAGGTCTC CTGAAGCTCC CACTTAACTG AGCATCAGCC ATGTTGTTAG AAACCTCTTA
  AGTCCAGAAG TATGTAACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47441859	NES11017822	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30374389					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441859	NES11017822	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67199793 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7209	transcription start site region 7209	1241 bp downstream
Tssr7210	transcription start site region 7210	1202 bp downstream
Tssr7211	transcription start site region 7211	1163 bp downstream
Tssr7212	transcription start site region 7212	257 bp upstream