rs30374737 SNP Detail

Summary

• ID
  rs30374737
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67166766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA CTCATGTTTC CTTGGCTTCT
  Y
  CTCGAGGCTT CCTTTGCCCA TCATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss47440907	NES11019798	PERLEGEN	MM_PANEL2	f	SNP		T	C	C	C	C		T	C
ss144536834	ENSMUSSNP4832992	ENSEMBL	ENSEMBL_Sanger	f	SNP	C				C
ss319761636	CHEV_1_67174181	CHEVERUD	SCREENING_POP	f	SNP							C			C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30374737					SNP	C	T	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47440907	NES11019798	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67166766 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr412515	regulatory region 412515	1882 bp distal
Tssr7186	transcription start site region 7186	1315 bp upstream
Tssr7187	transcription start site region 7187	1420 bp upstream
Tssr7188	transcription start site region 7188	1508 bp upstream