rs30374839 SNP Detail

Summary

• ID
  rs30374839
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35028753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGA CCTAAATTGA CGAGCCTTTT
  M
  TCTGCCCCAG GCCGGCCTAT GCGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46401491	mCV23998055	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss136292549	ENSMUSSNP1143065	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322899103	CHEV_9_34925042	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30374839					SNP	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35028753 () rs orientation: forward

Symbol	Name	Function Class
4930581F22Rik	RIKEN cDNA 4930581F22 gene	within coordinates
Cpgi21550	CpG island 21550	176 bp distal
Gm57537	predicted gene, 57537	within coordinates
Rr676432	regulatory region 676432	709 bp distal
Rr676433	regulatory region 676433	595 bp distal
Rr676434	regulatory region 676434	413 bp distal
Rr676435	regulatory region 676435	within coordinates
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	593 bp upstream
Tssr84325	transcription start site region 84325	690 bp downstream
Tssr84326	transcription start site region 84326	511 bp downstream
Tssr88717	transcription start site region 88717	664 bp upstream
Tssr88718	transcription start site region 88718	566 bp upstream
Tssr88719	transcription start site region 88719	471 bp upstream
Tssr88720	transcription start site region 88720	237 bp downstream
Tssr88721	transcription start site region 88721	1678 bp downstream
Tssr88722	transcription start site region 88722	1733 bp downstream