rs30374863 SNP Detail

Summary

• ID
  rs30374863
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9964055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGTGTTT ATAACTACAG
  GGTACCAGTA TATGCAGCAT ATACTCACAA AGTCACACAT ACATAAAAAA AATAATAATA
  AAAATAAGCC TTGAAAACAA AGTGTTCTTC TTGGTCTCAG AAGTCATGGG TGTTAGGCTT
  TTGTGTTTAA GTGTCCATAC CTGTGTCTGA ACTGGAGGGT GCTGACTGCT CAGTAGGGTG
  R
  CTGCTGGGTG CCTGTGGGCC ACAATGGGAG CCTCTCCTCT TAAACCTTGG AACACATTTC
  AAGAAGTCCA GACCCTTAAA TTTCCAGACA TCTTTCTGGT TTTTCTGGTT GGCATCCTTA
  CACTGGCCTT CGAGGAGGGG GTTCTTAGAA CACAATAGTT TGGTCTTTAA GTCTTTCAAG
  GGAAGATGGT AGTTTTTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39675492	mCV23006776	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss325719634	CHEV_19_10061181	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30374863					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9964055 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	within coordinates
Fth1	ferritin heavy polypeptide 1	1593 bp downstream
Rr543968	regulatory region 543968	606 bp proximal
Tssr155009	transcription start site region 155009	1762 bp downstream
Tssr155010	transcription start site region 155010	1574 bp downstream
Tssr158140	transcription start site region 158140	1851 bp upstream
Tssr158141	transcription start site region 158141	1823 bp upstream
Tssr158142	transcription start site region 158142	1798 bp upstream
Tssr158143	transcription start site region 158143	1732 bp upstream
Tssr158144	transcription start site region 158144	1594 bp upstream