rs30374979 SNP Detail

Summary

• ID
  rs30374979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67184293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTA TATTAGAATT AGTAATTTTG
  R
  TTTCAACCTG CCTCATGGCT TGTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47441369	NES11018680	PERLEGEN	MM_PANEL2	f	SNP			G	A	G	G	G	G	G		A	G	A		G
ss144537668	ENSMUSSNP6381650	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G					G
ss319761796	CHEV_1_67191708	CHEVERUD	SCREENING_POP	f	SNP										G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30374979					SNP	G	G	G	A	G	G	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441369	NES11018680	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67184293 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	693 bp distal
Rr34361	regulatory region 34361	294 bp distal
Tssr7193	transcription start site region 7193	326 bp downstream
Tssr7194	transcription start site region 7194	299 bp downstream
Tssr7195	transcription start site region 7195	246 bp downstream
Tssr7196	transcription start site region 7196	207 bp downstream
Tssr7197	transcription start site region 7197	136 bp downstream