rs30375010 SNP Detail

Summary

• ID
  rs30375010
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78077307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG TGAATTCCTC ATACGTTAGT
  R
  AATGATTGCT TTGATGTATT AACAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss46400534	mCV23623631	ABI	CRAMUS_MOUSE	f	SNP	G			A		G
ss61428137	NES16805409	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		A	G	G		G	G
ss136664241	ENSMUSSNP5098978	ENSEMBL	ENSEMBL_Sanger	f	SNP	G					G
ss323015496	CHEV_9_78017832	CHEVERUD	SCREENING_POP	f	SNP								G			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs30375010					SNP	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61428137	NES16805409	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78077307 () rs orientation: forward

Symbol	Name	Function Class
Cilk1	ciliogenesis associated kinase 1	within coordinates
Rr683495	regulatory region 683495	932 bp distal
Tssr86265	transcription start site region 86265	1192 bp downstream