rs30375764 SNP Detail

Summary

• ID
  rs30375764
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78522033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCCGGGA CAGGAAGGGA
  GGAAAGCAAT TTCTGTGCTC CCAAACCCAC ACTTGGTCCA GGTGCCACCT CCCTCCATTT
  AGCAGACAGT TAAAACATTC AACGTTTCTC TAGTTGCGTT TCGTTCCAAA CCAGACCGTC
  ATTATCTAAA ATACCTTTTG GAAATGAGAA AGTTTAAGTC CTCAGGGACT GAATGTGCCT
  R
  TTTTCCAAGT CTTTGGCAGT TCCCGGCTTT TATGGGGTAG TCATGGTGAA ACCGAGTCAT
  CTGAAGACAG GGGTGGTGCC AAGTAGGGTG TGGGGGAGGC AGCTTCAGAA AACCTGGGTT
  CAGAAAAGCA GTGATCAGTA ATTGCTGGGC ACCAACGAAC GCTGGTCACC TTCATTCCCA
  GCGCCACACT TCTCTCGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss46401595	mCV22795010	ABI	CRAMUS_MOUSE	f	SNP	G					A		A
ss61426863	NES16809506	PERLEGEN	MM_PANEL2	f	SNP		A	A	G	A		A		A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30375764					SNP	G	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61426863	NES16809506	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78522033 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	795 bp upstream
Cpgi22073	CpG island 22073	744 bp proximal
Gm69315	predicted gene, 69315	within coordinates
Rr683597	regulatory region 683597	155 bp distal
Rr683598	regulatory region 683598	532 bp proximal
Rr683599	regulatory region 683599	893 bp proximal
Tssr86295	transcription start site region 86295	701 bp upstream
Tssr86296	transcription start site region 86296	731 bp upstream
Tssr86297	transcription start site region 86297	750 bp upstream
Tssr86298	transcription start site region 86298	987 bp upstream
Tssr86299	transcription start site region 86299	1006 bp upstream
Tssr86300	transcription start site region 86300	1053 bp upstream
Tssr86301	transcription start site region 86301	1070 bp upstream
Tssr86302	transcription start site region 86302	1086 bp upstream
Tssr90659	transcription start site region 90659	894 bp downstream