rs30375867 SNP Detail

Summary

• ID
  rs30375867
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21572848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACATGGTG GTTCACAACC
  ATCCGTAATG AGATCTGATG CCCTCTTCTG GTGTGTCTGA AGACAGCTAC AGTGTACTTA
  AATGTAATAA TAAATAAATC TTTTAAAAAA GAAAAGATAT TTATTTACCT CAAAGGAACT
  GGGAGGTTGT GAGCCCAAGA TTCTCAAGGT TAGCAGCTCA ACACCATGGA ACTGGGACAC
  M
  GTCTCTGCAG CTCAATGCAT TTCCTCACAA TGGCTACAGG TTCAAGTCCT GTCTTCTCAC
  ATCACACCTA GGCAGGAAGA GCCAAACTGT TTTCGGTTTC TTGATACTTC TTTCCCAGAT
  TCCCCTCACA TGGCTATCTA CCTCTAGCTG CAAGAGAGTC TGCAAAGAAG GAAATTCGAC
  TAACAGGTCT GTATCTGGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39675695	mCV24451613	ABI	CRAMUS_MOUSE	f	SNP		A	C					C		C
ss50694227	NES13603174	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C		C	C	C	A	C	C	C	A
ss146182881	ENSMUSSNP1856656	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30375867					SNP	A	A	C	C	C	A	C	C	C	C	C	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50694227	NES13603174	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21572848 () rs orientation: forward

Symbol	Name	Function Class
1110059E24Rik	RIKEN cDNA 1110059E24 gene	1829 bp downstream
Gm38486	predicted gene, 38486	within coordinates
Gm59243	predicted gene, 59243	within coordinates