rs30376700 SNP Detail

Summary

• ID
  rs30376700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67234967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTGGAA AAAAAAATCA
  TTATCTCTTT GGGCACTAAC TTTTTAAAAG GTCAGTACTT TATTTTAAGT GCCCCATCAT
  TATGGTTCAT TCATATTCAT CGTGGCGGGG CTGGATGTAA TGATCTCATC TAGCATTAGT
  GACAATCACA CATGAACATT CATAGGTATG CCATTTGGTT GGCTCTCTCT CTCTCTTTTT
  Y
  TCTTAATGGA AGAAGTGTTT TGGCTTAAAA TACCACCAGC TGCTTTTTGT CCTTTAGAAT
  CATTGACTTT TTTTCTGTGG GTTTGAGGCG TACATGTGAG CCCTTAGGTC ACAAGCTGGA
  TTCTAAATAT TTTCTGCTCA GCGATTATTA CCTTTCTTTT TTTCTTACCA GCTTCACACC
  AGTTTGCCCT GTCAGCCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47442330	NES11016343	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30376700					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47442330	NES11016343	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67234967 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr412521	regulatory region 412521	1583 bp proximal
Tssr7228	transcription start site region 7228	1984 bp downstream