rs30376740 SNP Detail

Summary

• ID
  rs30376740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67184669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTG TATAGACTGT GACTCCCTTA
  R
  TATCTGAGGT TAAGCAGCAA AGCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47441390	NES11018687	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A		G	G	G	A
ss144537708	ENSMUSSNP6948892	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30376740					SNP	A	A	G	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441390	NES11018687	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67184669 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	1069 bp distal
Rr34361	regulatory region 34361	670 bp distal
Tssr7193	transcription start site region 7193	702 bp downstream
Tssr7194	transcription start site region 7194	675 bp downstream
Tssr7195	transcription start site region 7195	622 bp downstream
Tssr7196	transcription start site region 7196	583 bp downstream
Tssr7197	transcription start site region 7197	512 bp downstream