rs30377209 SNP Detail

Summary

• ID
  rs30377209
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67185327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTACTTTT CTGATGTAAT
  TTCCAGGACT GCTTACTTAA TTATGGTGTT TGCAGCTGGG TGGACCTGAG ACCAACTTAT
  CTGGCAGGAA TTTATTGAGT GCCTACTATG TGTTGATTAT GACAACAAGG CAAGGCGTTA
  TCTCTCTGTT CACGTGACAG AGGGAGACTG AGCTAGTGCA ACAAGTAGAG GAAGTATTTA
  S
  AATACATCTA ACAATTAGAC CTAACCAGAA TCCTCCATGC TAAAGAATGC AGATCAGAAA
  TTTCACAGCA TTGGTGCTGT TGTTTACTTG GGCACCCTGG AAGAATTAGT GGTCAGTTTT
  ATGTTACACG TGTGGGTTAC CTTATTTAGA GAGTCTTTTC TAAGACTGTA TTAATAAACG
  ACTCAAAGCA AAATTATCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47441399	NES11018692	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30377209					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441399	NES11018692	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67185327 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	1727 bp distal
Rr34361	regulatory region 34361	1328 bp distal
Tssr7193	transcription start site region 7193	1360 bp downstream
Tssr7194	transcription start site region 7194	1333 bp downstream
Tssr7195	transcription start site region 7195	1280 bp downstream
Tssr7196	transcription start site region 7196	1241 bp downstream
Tssr7197	transcription start site region 7197	1170 bp downstream
Tssr7198	transcription start site region 7198	1732 bp upstream