rs30377212 SNP Detail

Summary

• ID
  rs30377212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67185353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAC ATCTAACAAT TAGACCTAAC
  Y
  AGAATCCTCC ATGCTAAAGA ATGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44966791	mCV24326694	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss47441402	NES11018693	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T	T		C	T	T	T		C	T	T	C		T
ss144537736	ENSMUSSNP870477	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss319761806	CHEV_1_67192768	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30377212					SNP	T	T	T	T	C	T	T	C	C	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441402	NES11018693	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67185353 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	1753 bp distal
Rr34361	regulatory region 34361	1354 bp distal
Tssr7193	transcription start site region 7193	1386 bp downstream
Tssr7194	transcription start site region 7194	1359 bp downstream
Tssr7195	transcription start site region 7195	1306 bp downstream
Tssr7196	transcription start site region 7196	1267 bp downstream
Tssr7197	transcription start site region 7197	1196 bp downstream
Tssr7198	transcription start site region 7198	1706 bp upstream