rs30377677 SNP Detail

Summary

• ID
  rs30377677
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106699845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAC CCCTCCCACT TGTACAATGC
  W
  GTAGCGAGGG GACGGGGAGA GAGGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss46401618	mCV25234291	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss136940635	ENSMUSSNP5478651	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323187390	CHEV_9_106724977	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30377677					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106699845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22276	CpG island 22276	within coordinates
Dcaf1	DDB1 and CUL4 associated factor 1	within coordinates
Rr368848	regulatory region 368848	614 bp downstream
Rr401655	regulatory region 401655	within coordinates
Rr686402	regulatory region 686402	762 bp distal
Rr686403	regulatory region 686403	within coordinates
Tssr86935	transcription start site region 86935	652 bp downstream
Tssr86936	transcription start site region 86936	630 bp downstream
Tssr86937	transcription start site region 86937	612 bp downstream