rs30377812 SNP Detail

Summary

• ID
  rs30377812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67231507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGAGCA CATTCTAGCT
  GCAGAGTCTC AGTGCATCTC CATATCTGCC TGGAACATGG CTGTGCTAGG TTACTTTGCA
  TATGGTTGTT CTTACTCGTA GACTGTCGAT CACTACCCTT CACTGTCACA GAGCTGAACT
  GGCTCTATGT TTATTTTCTC AGCCCTCTGC TGCTGTGGTA TTTCTCACAT GCAACCACCT
  R
  CACTTCATCT CTTTGCCTTG ACCTCACGGT ACCTCATGCA GCTTATCCCT ACACGAGTTC
  TTTCAGATCC ACATCATTCC TTTGTGTCAA ATATTCTTTC ATATTTCCTT GGGCATCACT
  TTCCAGTAGA AATTTCCAGA AAGAATATTC TATATATTGC ATTGCTGGGT AGAGTGACTG
  ATAGCTTGGT ATGGCTACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47442192	NES11016536	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30377812					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47442192	NES11016536	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67231507 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7226	transcription start site region 7226	932 bp upstream
Tssr7227	transcription start site region 7227	1414 bp upstream
Tssr7228	transcription start site region 7228	1466 bp upstream