rs30377874 SNP Detail

Summary

• ID
  rs30377874
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67182213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAA GAGTTTCTCT TTGAAAAAGT
  K
  GAATTGACTG ATTTTTAAGG CTACA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45184756	mCV24326670	ABI	CRAMUS_MOUSE	f	SNP	G	G					T		G
ss47441300	NES11018874	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G		G	G	G	G		T	G	G	T		G
ss144537458	ENSMUSSNP4127468	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss319761760	CHEV_1_67189628	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30377874					SNP	G	G	G	T	G	G	T	G	G	G	G	G	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441300	NES11018874	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67182213 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17156	regulatory region 17156	1813 bp distal
Rr17157	regulatory region 17157	788 bp proximal
Rr34361	regulatory region 34361	788 bp proximal
Tssr7192	transcription start site region 7192	104 bp downstream
Tssr7193	transcription start site region 7193	1745 bp upstream
Tssr7194	transcription start site region 7194	1765 bp upstream
Tssr7195	transcription start site region 7195	1819 bp upstream
Tssr7196	transcription start site region 7196	1848 bp upstream
Tssr7197	transcription start site region 7197	1939 bp upstream