rs30377877 SNP Detail

Summary

• ID
  rs30377877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67182284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCATTGGG AACGGTGGGG
  CTCCCGACAC CACTGCCCGA GACGAACTGG GACTGAATAA GTACATGGAG TCTGATGGGA
  TCAAGGTAGT GTCCACCACA ATGTGCTAAG AGTTTCTCTT TGAAAAAGTT GAATTGACTG
  ATTTTTAAGG CTACAAGAAA AGCAAAGTCT CTCTCACAAC TATGTGTTAA GTCCATGTTT
  Y
  CAACCTTATT CCTAAGTACC ACAGGACATT CTTTAACTTG ACAAGTTTTA CTTATTAGGA
  CAGTTTAGAT TTTAATGCCT TTGGGGAAAC TTATTTTAAT GCATGAAATA TTGTTACAAG
  TTCAAATAAT GAGGCAATAA AAGATGAAGA ATCATCTTTT GAGATAAGTT TGATAATCAA
  CTGTGTGTTA TTTATTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47441303	NES11018876	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30377877					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441303	NES11018876	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67182284 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17156	regulatory region 17156	1884 bp distal
Rr17157	regulatory region 17157	717 bp proximal
Rr34361	regulatory region 34361	717 bp proximal
Tssr7192	transcription start site region 7192	175 bp downstream
Tssr7193	transcription start site region 7193	1674 bp upstream
Tssr7194	transcription start site region 7194	1694 bp upstream
Tssr7195	transcription start site region 7195	1748 bp upstream
Tssr7196	transcription start site region 7196	1777 bp upstream
Tssr7197	transcription start site region 7197	1868 bp upstream