rs30377981 SNP Detail

Summary

• ID
  rs30377981
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:10414224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATATTAACA GTGACAGTAA AGATAAGCAG GCCAGAGTAT
  GACCTGTGAC CTCACTCTGT GGTGCTGTCC AGACCCCAGG CTGCTGAGGC TGAGGGCCAG
  S
  AGTCAGATAC CTAGAAGTGG ACAGAACCAA CCTCTCTAGG GAGCATGGGA CCTGGCACAG
  GCTGGCTTGA TGTCCTTTAA GGCTTACTGC TGGGGCAGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39676411	mCV22700098	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G	C
ss146042377	ENSMUSSNP2495836	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C		C
ss325720395	CHEV_19_10511350	CHEVERUD	SCREENING_POP	f	SNP						C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30377981					SNP	G	G	C	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10414224 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr544112	regulatory region 544112			385 bp distal
Rr544113	regulatory region 544113			725 bp distal
Rr544114	regulatory region 544114			744 bp proximal
Rr544115	regulatory region 544115			795 bp proximal
Syt7	synaptotagmin VII			Intron
				Noncoding-Transcript-Variant
Tssr155051	transcription start site region 155051			1654 bp downstream