rs30378105 SNP Detail

Summary

• ID
  rs30378105
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67185388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCTGAGA CCAACTTATC
  TGGCAGGAAT TTATTGAGTG CCTACTATGT GTTGATTATG ACAACAAGGC AAGGCGTTAT
  CTCTCTGTTC ACGTGACAGA GGGAGACTGA GCTAGTGCAA CAAGTAGAGG AAGTATTTAC
  AATACATCTA ACAATTAGAC CTAACCAGAA TCCTCCATGC TAAAGAATGC AGATCAGAAA
  W
  TTCACAGCAT TGGTGCTGTT GTTTACTTGG GCACCCTGGA AGAATTAGTG GTCAGTTTTA
  TGTTACACGT GTGGGTTACC TTATTTAGAG AGTCTTTTCT AAGACTGTAT TAATAAACGA
  CTCAAAGCAA AATTATCCTT GCTGTTCTGT CTGATAACTA CAACATCTGA CCTCCCATCT
  GAGATTGTCA TCACCACCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47441405	NES11018695	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30378105					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441405	NES11018695	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67185388 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	1788 bp distal
Rr34361	regulatory region 34361	1389 bp distal
Tssr7193	transcription start site region 7193	1421 bp downstream
Tssr7194	transcription start site region 7194	1394 bp downstream
Tssr7195	transcription start site region 7195	1341 bp downstream
Tssr7196	transcription start site region 7196	1302 bp downstream
Tssr7197	transcription start site region 7197	1231 bp downstream
Tssr7198	transcription start site region 7198	1671 bp upstream