rs30378108 SNP Detail

Summary

• ID
  rs30378108
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67185455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAGGCGT TATCTCTCTG
  TTCACGTGAC AGAGGGAGAC TGAGCTAGTG CAACAAGTAG AGGAAGTATT TACAATACAT
  CTAACAATTA GACCTAACCA GAATCCTCCA TGCTAAAGAA TGCAGATCAG AAATTTCACA
  GCATTGGTGC TGTTGTTTAC TTGGGCACCC TGGAAGAATT AGTGGTCAGT TTTATGTTAC
  R
  CGTGTGGGTT ACCTTATTTA GAGAGTCTTT TCTAAGACTG TATTAATAAA CGACTCAAAG
  CAAAATTATC CTTGCTGTTC TGTCTGATAA CTACAACATC TGACCTCCCA TCTGAGATTG
  TCATCACCAC CTGTTCCCTT CTTTGTGCTA ATATTTGCTA CATGCGTCTT CATAACCCAG
  ACCAGAAAGA AACACTTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47441408	NES11018697	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30378108					SNP	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441408	NES11018697	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67185455 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	1855 bp distal
Rr34361	regulatory region 34361	1456 bp distal
Tssr7193	transcription start site region 7193	1488 bp downstream
Tssr7194	transcription start site region 7194	1461 bp downstream
Tssr7195	transcription start site region 7195	1408 bp downstream
Tssr7196	transcription start site region 7196	1369 bp downstream
Tssr7197	transcription start site region 7197	1298 bp downstream
Tssr7198	transcription start site region 7198	1604 bp upstream