rs30378141 SNP Detail

Summary

• ID
  rs30378141
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:41019186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTCAGGA ATTTCACACT
  CCACATGCCC AGCTGAGGGG ATCTTTTTAG ATTTTTTGCT AAAATGTCCC CAATCAAAAA
  TTCCTGAGGT TCTGGGCTTC TCTCTTTTCT GAGTCTTTGT CACATGGTCT CCTATTTTTT
  GTTTTAAGTC ATCACAGCCA CTCTCAACTT CATTCCTTGA TGTTCTTTTC ACACAATCCA
  W
  TATTTCAACT CGTTTTTGAG TATAACTAAT CTGTTAGCCT TATGTACAGT GTTAGCTTTA
  AAAGAGAAAG AGATTAGATA GGTAAAGGGG GAGGGATAAA ACAGAAAAAA CATCTTCAAA
  GAGAAAGTTA AAAACAGAAA TCAAAAGTTT TAGCAGCTAC CAAGATGCTT TTCATGGTAA
  AGGAACTGAA CAGGGACCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss39676016	mCV22807592	ABI	CRAMUS_MOUSE	f	SNP		A	T					A
ss50828484	NES13536825	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	A	A		A	A		A	A	A		T
ss146399534	ENSMUSSNP4346841	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
ss325808831	CHEV_19_41105237	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30378141					SNP	A	A	T	A	T	A	A	A	A	A	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828484	NES13536825	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41019186 () rs orientation: forward

Symbol	Name	Function Class
Dntt	deoxynucleotidyltransferase, terminal	within coordinates
Rr365008	regulatory region 365008	586 bp distal
Rr365009	regulatory region 365009	within coordinates
Rr370496	regulatory region 370496	1323 bp downstream
Rr370497	regulatory region 370497	384 bp upstream
Tssr5510	transcription start site region 5510	464 bp downstream
Tssr156412	transcription start site region 156412	1349 bp downstream
Tssr159242	transcription start site region 159242	375 bp downstream
Tssr159243	transcription start site region 159243	405 bp downstream
Tssr159244	transcription start site region 159244	426 bp downstream
Tssr159245	transcription start site region 159245	435 bp downstream
Tssr159246	transcription start site region 159246	1297 bp downstream
Tssr159247	transcription start site region 159247	1311 bp downstream