rs30378176 SNP Detail

Summary

• ID
  rs30378176
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67197067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAATATCA CAAACAGACA GGCTTTCATA
  ACTGCTCAGA ATCATGGCTA TGCTCTGGAC AACACACTCC CTGCTGGCTG GAAACCACTG
  TTTGTGAATG TCAATGATCA AACAAACGAG GTAAATGCTC TCAACAATCC TGTTCAGTTG
  S
  AAGTGAGAAA TTAAGGGCTT TTTATGGTCT CTTCTGTACT GCTTTCTCAT GTCTATGTGA
  TATGCATGTG TGTGTGCAAG TGCACATGCA TGTGCATGTC TACTGTGCAG GTATGTGCAC
  CCAAgtgtgc acatggggag ccccaagcag                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47441799	NES11018020	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	G	G	G	G		G	G	G	G		G
ss319761945	CHEV_1_67204482	CHEVERUD	SCREENING_POP	f	SNP										C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30378176					SNP	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441799	NES11018020	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67197067 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7206	transcription start site region 7206	1683 bp downstream
Tssr7207	transcription start site region 7207	1005 bp downstream
Tssr7208	transcription start site region 7208	85 bp downstream
Tssr7209	transcription start site region 7209	1474 bp upstream
Tssr7210	transcription start site region 7210	1513 bp upstream
Tssr7211	transcription start site region 7211	1525 bp upstream