rs30378182 SNP Detail

Summary

• ID
  rs30378182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67197187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGGCTG GAAACCACTG
  TTTGTGAATG TCAATGATCA AACAAACGAG GTAAATGCTC TCAACAATCC TGTTCAGTTG
  GAAGTGAGAA ATTAAGGGCT TTTTATGGTC TCTTCTGTAC TGCTTTCTCA TGTCTATGTG
  ATATGCATGT GTGTGTGCAA GTGCACATGC ATGTGCATGT CTACTGTGCA GGTATGTGCA
  Y
  CCAAGTGTGC ACATGGGGAG CCCCAAGCAG GACACCCAGT TTCTTCCTGG ATTGTTCTTC
  ACATTACTGT CTTATGACAG GGTCACTCAT TGAACTGGAT AGCTTTGGTT TGGCTGTACG
  GCCAATAAAT AAGCTCTCAG GAAGTGTCTA GCTCCATTCC TTAATGCTGA GGTTATAAGC
  ACATGCATTC ATTTGCTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47441805	NES11018024	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30378182					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441805	NES11018024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67197187 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7206	transcription start site region 7206	1803 bp downstream
Tssr7207	transcription start site region 7207	1125 bp downstream
Tssr7208	transcription start site region 7208	205 bp downstream
Tssr7209	transcription start site region 7209	1354 bp upstream
Tssr7210	transcription start site region 7210	1393 bp upstream
Tssr7211	transcription start site region 7211	1405 bp upstream