rs30378224 SNP Detail

Summary

• ID
  rs30378224
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115095532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGACAAC CTAAATATGA
  GAAAAAATAC AATGCTAGGA TTTGGGGGGA CTGTTTTACT GATGATCCCA TAAAGCTAGT
  AAGCTTTTCT AAACTCAATG GAGAATAGCT CAAGTTAGAT TTGATTTAAC AGGAAGACTA
  AGAACATCAC ATAACTGAAC TAGAAGAAAT AGGCTGTCCT GGAAATGAAT ATAAGCAATA
  M
  ATTTTTAGAC AAAAACAACA AGCGTGTATT CCATCTATTT ATGATGATCT ATTTACTGAA
  AGAAGGTTCA CTTAGCTTAA GGAGGAGGGA TTCTGACTCT GGTCAGTGAC TCAGCTAAAG
  GGGCACTCAC ATCCCCTGGC CACACTGTGC GACTCTCGAC AGTGCTGATT GGCTGAAGCT
  GTAACACGGA TTACAAGACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46400730	mCV23360330	ABI	CRAMUS_MOUSE	f	SNP		C	A					A
ss61227200	NES16842613	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A		A	A	A	A	A	A	A	C
ss137005389	ENSMUSSNP215944	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30378224					SNP	C	C	A	A	A	C	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61227200	NES16842613	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115095532 () rs orientation: forward

Symbol	Name	Function Class
Rr193053	regulatory region 193053	269 bp proximal
Stt3b	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	within coordinates