rs30378829 SNP Detail

Summary

• ID
  rs30378829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67182560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAG ATTATCTAGT CAAGGATATT
  Y
  GGATAGTATC TTGAAATATG GAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45141111	mCV24326683	ABI	CRAMUS_MOUSE	f	SNP	C	C				T		C
ss47441315	NES11018886	PERLEGEN	MM_PANEL2	f	SNP		C	C	T	C		C	C	C	C		T	C	C	T		C
ss144537475	ENSMUSSNP2088497	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss319761763	CHEV_1_67189975	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30378829					SNP	C	C	C	T	C	T	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441315	NES11018886	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67182560 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	441 bp proximal
Rr34361	regulatory region 34361	441 bp proximal
Tssr7192	transcription start site region 7192	451 bp downstream
Tssr7193	transcription start site region 7193	1398 bp upstream
Tssr7194	transcription start site region 7194	1418 bp upstream
Tssr7195	transcription start site region 7195	1472 bp upstream
Tssr7196	transcription start site region 7196	1501 bp upstream
Tssr7197	transcription start site region 7197	1592 bp upstream