rs30378967 SNP Detail

Summary

• ID
  rs30378967
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67185544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTAACC AGAATCCTCC
  ATGCTAAAGA ATGCAGATCA GAAATTTCAC AGCATTGGTG CTGTTGTTTA CTTGGGCACC
  CTGGAAGAAT TAGTGGTCAG TTTTATGTTA CACGTGTGGG TTACCTTATT TAGAGAGTCT
  TTTCTAAGAC TGTATTAATA AACGACTCAA AGCAAAATTA TCCTTGCTGT TCTGTCTGAT
  R
  ACTACAACAT CTGACCTCCC ATCTGAGATT GTCATCACCA CCTGTTCCCT TCTTTGTGCT
  AATATTTGCT ACATGCGTCT TCATAACCCA GACCAGAAAG AAACACTTCC TCACTAGTGT
  TCAAAAATTT CCCCAAAGGC AACTAAGTTT TCTCACCAAA TTTTAATACA TTAAAAAGGA
  AACCATGGAA TTCGCTAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45119525	mCV24326966	ABI	CRAMUS_MOUSE	f	SNP	G	G				A		G
ss47441417	NES11018700	PERLEGEN	MM_PANEL2	f	SNP			A	G	A		G		G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30378967					SNP	G	G	A	G	A	A	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441417	NES11018700	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67185544 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	1944 bp distal
Rr34361	regulatory region 34361	1545 bp distal
Tssr7193	transcription start site region 7193	1577 bp downstream
Tssr7194	transcription start site region 7194	1550 bp downstream
Tssr7195	transcription start site region 7195	1497 bp downstream
Tssr7196	transcription start site region 7196	1458 bp downstream
Tssr7197	transcription start site region 7197	1387 bp downstream
Tssr7198	transcription start site region 7198	1515 bp upstream