rs30379111 SNP Detail

Summary

• ID
  rs30379111
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67197772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTT ATAGACCACA TTCATTTTTT
  W
  AAATTATTAT ATTATGGAAC CCTCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45137888	mCV24327308	ABI	CRAMUS_MOUSE	f	SNP	T			A		T
ss47441814	NES11017898	PERLEGEN	MM_PANEL2	f	SNP		T	T		T	T	T	T		A	T	A		T
ss144538402	ENSMUSSNP7015708	ENSEMBL	ENSEMBL_Sanger	f	SNP	T					T
ss319761952	CHEV_1_67205187	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30379111					SNP	T	T	T	A	T	T	T	T	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441814	NES11017898	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67197772 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7207	transcription start site region 7207	1710 bp downstream
Tssr7208	transcription start site region 7208	790 bp downstream
Tssr7209	transcription start site region 7209	769 bp upstream
Tssr7210	transcription start site region 7210	808 bp upstream
Tssr7211	transcription start site region 7211	820 bp upstream