rs30379964 SNP Detail

Summary

• ID
  rs30379964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67197796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACAGATC AGTTTGGAGG
  AAGCCCTTGG TGTGTCCTTG AGTCTCACTT AGCACTAGAG TACCCTCTAT AAGAAGAACT
  TTGGGAAAGT CATTTACATG TTGGATATGA GAATTTTGTT TTATTTTGAA GAGATCCCAG
  AAGAGACTCA AAGGTTATAG ACCACATTCA TTTTTTAAAA TTATTATATT ATGGAACCCT
  Y
  ATCCAGCTGT TTCTTTGTTG GGCTGTTTTG TATTCTTACT TAAATAGACA GGTGAATCTT
  TAATGTCTCC AACCATGTTA CTTAATAGTA CTGGGGCTTT TCCAGAACTT TATTAAGCAC
  TTAACTTGGT TTCCTATTTG AACTTTATTA TCTCCTGAAT AATACATTGC CATACTTGAC
  ATTTGTTGTC ATAGATGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47441817	NES11017899	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30379964					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441817	NES11017899	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67197796 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7207	transcription start site region 7207	1734 bp downstream
Tssr7208	transcription start site region 7208	814 bp downstream
Tssr7209	transcription start site region 7209	745 bp upstream
Tssr7210	transcription start site region 7210	784 bp upstream
Tssr7211	transcription start site region 7211	796 bp upstream