rs30379967 SNP Detail

Summary

• ID
  rs30379967
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67197853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTACCCTC TATAAGAAGA
  ACTTTGGGAA AGTCATTTAC ATGTTGGATA TGAGAATTTT GTTTTATTTT GAAGAGATCC
  CAGAAGAGAC TCAAAGGTTA TAGACCACAT TCATTTTTTA AAATTATTAT ATTATGGAAC
  CCTCATCCAG CTGTTTCTTT GTTGGGCTGT TTTGTATTCT TACTTAAATA GACAGGTGAA
  W
  CTTTAATGTC TCCAACCATG TTACTTAATA GTACTGGGGC TTTTCCAGAA CTTTATTAAG
  CACTTAACTT GGTTTCCTAT TTGAACTTTA TTATCTCCTG AATAATACAT TGCCATACTT
  GACATTTGTT GTCATAGATG GAATTTCTCC CTGTTTCTTA TTTCTTTAGG GGATTATGCA
  TGAGAGCAAA CCTTTCTTCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47441820	NES11017900	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30379967					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441820	NES11017900	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67197853 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7207	transcription start site region 7207	1791 bp downstream
Tssr7208	transcription start site region 7208	871 bp downstream
Tssr7209	transcription start site region 7209	688 bp upstream
Tssr7210	transcription start site region 7210	727 bp upstream
Tssr7211	transcription start site region 7211	739 bp upstream