rs30380007 SNP Detail

Summary

• ID
  rs30380007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67231800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTTCAT ATTTCCTTGG
  GCATCACTTT CCAGTAGAAA TTTCCAGAAA GAATATTCTA TATATTGCAT TGCTGGGTAG
  AGTGACTGAT AGCTTGGTAT GGCTACCAAG CAAATTGAAA GGTGAGGAAC TACCGATATA
  AAATTTAAGT TTATGAAAAA GGCTTTATAT TTAAATAACC GGTGGGCTAG TGACGTGCAT
  Y
  GTGGACAGCA CAGCTCTTGA GTGTGTAGCT AGGACTTGAC ATATCTCAGT GCATAACAAT
  AGAAATATCA GTAATTCAAT AATTTTTTTT TTAGGAAAAG CATTGCTATG ATGAAATATA
  TGTCAAAACC TGCATATGTT AAAACTCTAA ATAGCAATTA AACAACAAGT TCAAGGCACT
  GAGAGGAATG ATAGAAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	MOLF/EiJ	PWD/PhJ
ss47442213	NES11016546	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	MOLF/EiJ	PWD/PhJ
rs30380007					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47442213	NES11016546	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67231800 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7226	transcription start site region 7226	639 bp upstream
Tssr7227	transcription start site region 7227	1121 bp upstream
Tssr7228	transcription start site region 7228	1173 bp upstream