rs30380012 SNP Detail

Summary

• ID
  rs30380012
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67231834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG CTCTTGAGTG TGTAGCTAGG
  R
  CTTGACATAT CTCAGTGCAT AACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47442219	NES11016548	PERLEGEN	MM_PANEL2	f	SNP			G	A	G	G	G		A	G	A		G
ss144540086	ENSMUSSNP6249436	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G				G
ss319762262	CHEV_1_67239249	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30380012					SNP	G	G	G	A	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47442219	NES11016548	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67231834 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7226	transcription start site region 7226	605 bp upstream
Tssr7227	transcription start site region 7227	1087 bp upstream
Tssr7228	transcription start site region 7228	1139 bp upstream