rs30380604 SNP Detail

Summary

• ID
  rs30380604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58884833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCT TGGTACCTTC CTCGGCTCTG
  R
  AGAGGAAGCT TCCGCCCAAG TAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46401746	mCV24172190	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss136525656	ENSMUSSNP7076592	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss322974163	CHEV_9_58825357	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30380604					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58884833 () rs orientation: forward

Symbol	Name	Function Class
Gm47271	predicted gene, 47271	within coordinates
Neo1	neogenin	within coordinates
Rr383441	regulatory region 383441	577 bp upstream
Rr680057	regulatory region 680057	1564 bp proximal
Tssr89922	transcription start site region 89922	1585 bp downstream