rs30381989 SNP Detail

Summary

• ID
  rs30381989
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92132962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTT CTAGAATACA AAAGTAGGGG
  W
  TGTAAGCGGG TAAAGGTCCG AATGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46401077	mCV24280397	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss136805866	ENSMUSSNP1660094	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30381989					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92132962 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22145	CpG island 22145	153 bp distal
Gm67683	predicted gene, 67683	392 bp upstream
Plscr1	phospholipid scramblase 1	within coordinates
Rr206878	regulatory region 206878	within coordinates
Rr383753	regulatory region 383753	within coordinates
Rr401603	regulatory region 401603	1986 bp upstream
Tssr86494	transcription start site region 86494	1242 bp downstream
Tssr86495	transcription start site region 86495	1220 bp downstream
Tssr86496	transcription start site region 86496	1180 bp downstream
Tssr86497	transcription start site region 86497	1156 bp downstream
Tssr86498	transcription start site region 86498	875 bp downstream
Tssr86499	transcription start site region 86499	849 bp downstream
Tssr86500	transcription start site region 86500	841 bp downstream
Tssr86501	transcription start site region 86501	811 bp downstream
Tssr86502	transcription start site region 86502	782 bp downstream
Tssr86503	transcription start site region 86503	722 bp downstream
Tssr86504	transcription start site region 86504	635 bp downstream
Tssr86505	transcription start site region 86505	598 bp downstream
Tssr90887	transcription start site region 90887	423 bp upstream
Tssr90888	transcription start site region 90888	381 bp upstream