rs30382315 SNP Detail

Summary

• ID
  rs30382315
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101867020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAC CTTGAAACAG AGGCAGCTAT
  K
  TTGACAGACA AACCCTGGGG CCCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss46402328	mCV23562233	ABI	CRAMUS_MOUSE	f	SNP	G	G				T
ss61446059	NES16829112	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	T		G		G	G
ss136869360	ENSMUSSNP6190250	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323155298	CHEV_9_101892151	CHEVERUD	SCREENING_POP	f	SNP								G			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs30382315					SNP	G	G	G	G	T	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61446059	NES16829112	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101867020 () rs orientation: forward

Symbol	Name	Function Class
Ephb1	Eph receptor B1	within coordinates
Gm31326	predicted gene, 31326	within coordinates
Gm57054	predicted gene, 57054	1914 bp upstream
Gm69124	predicted gene, 69124	within coordinates
Rr198442	regulatory region 198442	1220 bp distal
Tssr86718	transcription start site region 86718	620 bp downstream
Tssr86719	transcription start site region 86719	1929 bp upstream