rs30383044 SNP Detail

Summary

• ID
  rs30383044
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67233820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAATGTTG GAAAACCAGT
  TCCAATAGAT TCCTGTTTCA CACAGAAGAA GAGCTAGAGT AAAAGTCCAA CATTGAAAAG
  GTAGCCGCAG ATTTAGGAAT CACCATGCAG CCAGGCCAAT GGATCTCATG ACAGTGGCTA
  CATACACAGA GGGAGAGAGT GTGGTCCAAC TGGAACAGGT GTCAAAGGCT GAGGCTGGAC
  W
  AAAGCTGCAC CAGTTGCAAT GGATAAAAAA CAGGGTGGAA TGGGTAGAGG AACCAATGTG
  GCAACTCTGG CTTTATACAG TCACTTAAAA CTGTATAAAA AGTAGTCCCT AGTTATTACT
  GAGGAAGAAA ACTCATTAGA ACCATAAACA TAAGATTTTA AATAGATGAG GGAGAGAGAC
  AGAGAGACAG AGAAAGACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47442294	NES11016437	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30383044					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47442294	NES11016437	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67233820 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7226	transcription start site region 7226	1363 bp downstream
Tssr7227	transcription start site region 7227	887 bp downstream
Tssr7228	transcription start site region 7228	837 bp downstream