rs30383343 SNP Detail

Summary

• ID
  rs30383343
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124194995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGCGTTTAC TTCCAAGTTG GCTGCACATG CGTGTCGCAG AAGTGCGGGT CTGGCGAGTA
  CAAAGAAGCC TGGCTTCGCG CATGCGTATC GTGACGTATG ACAGCGAGTA TGGCCTGGTG
  CCATCAGTCA TCCTGGAAGC TCCGCTCACT TTTAAAAAAT AATCTCATTG GTGCCTAATT
  GTCATTTATT TACTTATCAT TTGCATATTC ATGAATCTCG TTTACATATT CTCAAGGTGC
  ATTTGTTTAT CGCCCCCCAA GCTGGATTGG AAGATGACGT CACCCTGTTG TTACCCACCG
  M
  GTGACGCCTG GATGCTCCTC AGGCTCCGCC CCTTTTGGTC AGGAATTGAT GTCTTGAAAC
  ATTGGCATAG CATTTGCATT TCATTTGAAT ATTCATTACC ACATTTGCAT GCAGACAAGC
  CAAAGATTTG TGAGTTTATG AATTATTAAA AAACAGGAAG TGACCTCAGC CTGAGGTCCA
  GACAGGAAGT AGCCCCACCA CGAGTTCTAG ACAGGAAGTG ATCCCGGGGT CACATGGTAG
  AGGCTGTAGC CCACCATGAA CTTGGCCCCG CCCACCTACA CCATGCCTCC GCCTCCCGGT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46402255	mCV24427012	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A	C
ss134041040	ENSMUSSNP484220	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30383343					SNP	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124194995 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	130 bp downstream
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	417 bp upstream
Rr689518	regulatory region 689518	1074 bp distal
Rr689519	regulatory region 689519	within coordinates
Rr689520	regulatory region 689520	795 bp proximal
Rr689521	regulatory region 689521	911 bp proximal
Rr689522	regulatory region 689522	1812 bp proximal
Tssr3091	transcription start site region 3091	1724 bp downstream
Tssr3092	transcription start site region 3092	1696 bp downstream
Tssr3093	transcription start site region 3093	1676 bp downstream
Tssr3094	transcription start site region 3094	1624 bp upstream
Tssr3095	transcription start site region 3095	1423 bp upstream
Tssr3096	transcription start site region 3096	1343 bp upstream
Tssr3097	transcription start site region 3097	1267 bp upstream
Tssr3098	transcription start site region 3098	916 bp upstream
Tssr3099	transcription start site region 3099	813 bp upstream
Tssr3100	transcription start site region 3100	788 bp upstream
Tssr3101	transcription start site region 3101	676 bp upstream
Tssr3102	transcription start site region 3102	533 bp upstream
Tssr3103	transcription start site region 3103	491 bp upstream
Tssr3104	transcription start site region 3104	399 bp upstream
Tssr3105	transcription start site region 3105	289 bp upstream