rs30383607 SNP Detail

Summary

• ID
  rs30383607
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121424330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAG ATTGACATCA TATGGTGTCT
  W
  CAGTGCCCAC ACTGAGCCCT GGCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss46403199	mCV25163121	ABI	CRAMUS_MOUSE	f	SNP	A	A					A		T
ss50803337	NES14204452	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	A	T		A		T	A		A	A	A
ss137068114	ENSMUSSNP6351389	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
ss323231647	CHEV_9_121504382	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30383607					SNP	A	A	T	T	A	T	A	A	T	T	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50803337	NES14204452	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121424330 () rs orientation: forward

Symbol	Name	Function Class
Gm57058	predicted gene, 57058	1285 bp downstream
Lyzl4	lysozyme-like 4	within coordinates
Lyzl4os	lysozyme-like 4, opposite strand	within coordinates
Rr199243	regulatory region 199243	330 bp distal
Rr199244	regulatory region 199244	within coordinates
Tssr92055	transcription start site region 92055	1945 bp downstream