rs30383639 SNP Detail

Summary

• ID
  rs30383639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78355997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCCCGC GGCCGCGGCG
  GGAACTCTAC GTCCGACCGA GCGCGGGCAG GGTTGCGGTG GACCGGAGTG GCCGGTGCCC
  GGGGTCAGGG AGCGGAGGAC TGAAAGCCAC GGCGGCTGCT GGGCAGGTCG CTGGGTTGAC
  CCTCCCCGTA TTGTCATCTC AGAGAAATCC CGAGTTAACA TTTTCACACC CGTCTTGTTA
  R
  GCGACCGACG TGGTGCGTCC ACGGAGAGCT TGTCAAGCTC TGCCGCCGCT TGTCGCGTTC
  CGTATTTCCA TTGCGTGTTT TGTGCTGATA GGCGCCTCAG CTTACGCACC TCGTTTTCAT
  TATCCATCCG ACACTTGATA AACATTAGGC TGATCCCGCT TCTAGGCTCT GGCGAGTAGT
  GTCTCGTTAA ATATAGAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46401974	mCV25043871	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss61427213	NES16810963	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A	A	A	A	A	A	A	A	A
ss136667723	ENSMUSSNP4286315	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30383639					SNP	G	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427213	NES16810963	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78355997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	within coordinates
Gm17324	predicted gene, 17324	within coordinates
Mto1	mitochondrial tRNA translation optimization 1	within coordinates
Rr401544	regulatory region 401544	378 bp downstream
Tssr86287	transcription start site region 86287	487 bp downstream