rs30384272 SNP Detail

Summary

• ID
  rs30384272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:63796376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTTGCCC TCTGACCTCT
  ACATGAGCAC TGTGGCTCAT ACTAAATAAA TAAATGTAAC TTCATGGTAA CTGGGTGTTT
  TGTTTTGAGA CATAGTCTAC AAAGTAGCCT CTGCTGGCCT CAAACTCACT GAGATCTGCC
  TGCCTTTGCC TACTGGGTGC TGGGAATTAA TGGTGTGTGC CACCATACCC AGTGTAAAGT
  R
  TAAAGATTTT ACAAAGCTAG CACAGGATAT AGCAACAACA AAACAAACAA GCAAAATCTG
  TGATTGAAAT TCTCTCACTT ACTTGAATCA TGGGATTTGA AAACACTTGA AGTATTGCTG
  GCCTTTGTTC CCCTCTCAGG GCCTCTCAGC CCTTGGGAGT GACCCCTGCA GGACACAAGC
  CAACCTGCTC AGGCCAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46403304	mCV25257586	ABI	CRAMUS_MOUSE	f	SNP		A	G					G	G
ss50722625	NES14252366	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G		G	G	G	G		G
ss136558495	ENSMUSSNP6971101	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss322984103	CHEV_9_63736901	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30384272					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50722625	NES14252366	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:63796376 () rs orientation: forward

Symbol	Name	Function Class
Rr49	regulatory region 49	within coordinates
Rr959	regulatory region 959	within coordinates
Rr973	regulatory region 973	1624 bp proximal
Rr196462	regulatory region 196462	25 bp proximal
Rr196463	regulatory region 196463	1625 bp proximal
Rr201237	regulatory region 201237	within coordinates
Rr201238	regulatory region 201238	1425 bp proximal