rs30384678 SNP Detail

Summary

• ID
  rs30384678
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:51657049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATCCTCT TGGTACTTTT
  CAGGTTCCCA TAATAAACTT CAATCACCTC ATGGTCAACT GAAATTATAA AACCTGCTCA
  ATTAGAATTT CCCTCTTGAG AAATTGAAAA GCCTTTAAAC TCTAATGATC ATCTCTTTTT
  GTGCCAGGTA CAGTAATTAT TGTCTACAGA TGGCATCTCA GAATTCACAA TCATCAAATA
  S
  AACGTTAAGG CTGGTGTAGT ATAACTCAGG GGTACCTTAC TTGCCTAGCA TGTAGAAAGC
  CCTAAATTCC ATCTGCTGGG GAAGGATGGG TATGGAGGCA GGCATAGGGT ATTTTCTGTA
  GCTCTTTAGT CATCTGATTT GTTAAAGGAA AGGAAGTCTA GTTAGTAGGT TATAATTTAC
  AATTCTTTTC TAAGTCTAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46943479	NES10933339	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30384678					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46943479	NES10933339	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:51657049 () rs orientation: forward

Symbol	Name	Function Class
Gpc3	glypican 3	within coordinates
Rr5963	regulatory region 5963	1552 bp proximal
Tssr163364	transcription start site region 163364	947 bp downstream