rs30385580 SNP Detail

Summary

• ID
  rs30385580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:51658115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTATTTC AAAAGTCATC
  TCTGGGACAC CGAGCTTTAA CAATGAACAA TGAACCCAGT AAGACAGCAA GCAAATTCAC
  AATGAAAAAA AAAAAAAAAA CAGCTCAGCC TGGCGTAGGG AAGGGATACC GTCAACGAGC
  TTCTCCAAGC AATCCTCTCT CGGTGAAGCA AAGTGTCCTG CCCATCCAAC TTGCTAAAAA
  Y
  GAACAAGGGC AACTGTGCCT ATTTTCTTGT AGTTTCACTC TTACATATAT ATCCCATTAG
  CTAACTCAGT TCCCAAGTCA GCCACTAGTT ATGGATGTGG GCTAGGTCAA GCCACCACCT
  CAAGCCTCCC ATGTCTAAAC CCATCCAGTG AAGAAAGCAG CAACAGCATC GCCAACTATC
  TATCCATTGG CACTGCTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46943491	NES10933255	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30385580					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46943491	NES10933255	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:51658115 () rs orientation: forward

Symbol	Name	Function Class
Gpc3	glypican 3	within coordinates
Tssr163364	transcription start site region 163364	117 bp upstream