rs30386119 SNP Detail

Summary

• ID
  rs30386119
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93271519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGATGAT GGAGGGTGAG CGGCCCCTGT GGGTGACCGG
  GGAGCGGCGA GCTTCGGGCT GGGCGGTCAC GGCCTCTTGC GGGATCGGAA TTCGGCCTCC
  W
  GCCTCCGGCC ACAGCCACAG AGCTCTGACA GCTGCCAATA TGGCTGGACA GCCAGGGAGG
  CTCGGAGCCC GGGAGTCCCG TCCCGAGGGC GGTAGCGGCC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49627906	NES12937438	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30386119					SNP	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49627906	NES12937438	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93271519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi598	CpG island 598	within coordinates
Pask	PAS domain containing serine/threonine kinase	282 bp upstream
Ppp1r7	protein phosphatase 1, regulatory subunit 7	within coordinates
Rr29849	regulatory region 29849	within coordinates
Rr366968	regulatory region 366968	835 bp downstream
Rr396176	regulatory region 396176	73 bp downstream
Tssr163	transcription start site region 163	106 bp downstream
Tssr8169	transcription start site region 8169	125 bp downstream
Tssr13015	transcription start site region 13015	1225 bp upstream
Tssr13016	transcription start site region 13016	1200 bp upstream
Tssr13017	transcription start site region 13017	1177 bp upstream
Tssr13018	transcription start site region 13018	1166 bp upstream
Tssr13019	transcription start site region 13019	994 bp upstream
Tssr13020	transcription start site region 13020	908 bp upstream
Tssr13021	transcription start site region 13021	886 bp upstream
Tssr13022	transcription start site region 13022	273 bp upstream