rs30386120 SNP Detail

Summary

• ID
  rs30386120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93271345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCGGGA TGTCTGCTTT
  CTTCGTGCTC GCCTAGACTC TACTCATTCA TCAAACCCCT AACCCAGGTG GAGCCGGAGC
  CTGTGGGAAC TACAATCCCC ATGAAACACT GCGCCCGCGC AAGCATTGTC AGCTCGCGCT
  TCTATACTTT GTTCCATTGG CTGGCCTATT GGACCTGGAA TCCTGATTGG CCCATGGCCT
  R
  AGGCGACAGA TTCCGGAAAG GGAAAGAGCA GCCAATATGG CGGCAGAGCG CGGCGCGGGG
  CAGCAACAGT CGCAGGAGAT GATGGAGGGT GAGCGGCCCC TGTGGGTGAC CGGGGAGCGG
  CGAGCTTCGG GCTGGGCGGT CACGGCCTCT TGCGGGATCG GAATTCGGCC TCCAGCCTCC
  GGCCACAGCC ACAGAGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
ss49627907	NES12937437	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	G		A	G
ss144957776	ENSMUSSNP1454062	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A										G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
rs30386120					SNP	A	A	A	A	A	A	A	G	A	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49627907	NES12937437	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93271345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi598	CpG island 598	within coordinates
Pask	PAS domain containing serine/threonine kinase	108 bp upstream
Ppp1r7	protein phosphatase 1, regulatory subunit 7	5 bp upstream
Rr29849	regulatory region 29849	within coordinates
Rr366968	regulatory region 366968	661 bp downstream
Rr396176	regulatory region 396176	within coordinates
Tssr163	transcription start site region 163	59 bp upstream
Tssr8169	transcription start site region 8169	within coordinates
Tssr13015	transcription start site region 13015	1051 bp upstream
Tssr13016	transcription start site region 13016	1026 bp upstream
Tssr13017	transcription start site region 13017	1003 bp upstream
Tssr13018	transcription start site region 13018	992 bp upstream
Tssr13019	transcription start site region 13019	820 bp upstream
Tssr13020	transcription start site region 13020	734 bp upstream
Tssr13021	transcription start site region 13021	712 bp upstream
Tssr13022	transcription start site region 13022	99 bp upstream