rs30386121 SNP Detail

Summary

• ID
  rs30386121
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93270536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC CACCGACCAA TCGCAGAACG
  M
  CTTAGGCAGC ATAACAAGGG ACCAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49627908	NES12937436	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	A	C	C	C		A	C	C	A
ss144957766	ENSMUSSNP1841389	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss319843453	CHEV_1_95239391	CHEVERUD	SCREENING_POP	f	SNP												C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30386121					SNP	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49627908	NES12937436	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93270536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi598	CpG island 598	within coordinates
Pask	PAS domain containing serine/threonine kinase	within coordinates
Ppp1r7	protein phosphatase 1, regulatory subunit 7	814 bp upstream
Rr29849	regulatory region 29849	within coordinates
Rr366968	regulatory region 366968	within coordinates
Rr396176	regulatory region 396176	609 bp upstream
Tssr163	transcription start site region 163	868 bp upstream
Tssr8169	transcription start site region 8169	804 bp upstream
Tssr13015	transcription start site region 13015	242 bp upstream
Tssr13016	transcription start site region 13016	217 bp upstream
Tssr13017	transcription start site region 13017	194 bp upstream
Tssr13018	transcription start site region 13018	183 bp upstream
Tssr13019	transcription start site region 13019	11 bp upstream
Tssr13020	transcription start site region 13020	54 bp downstream
Tssr13021	transcription start site region 13021	87 bp downstream
Tssr13022	transcription start site region 13022	684 bp downstream