rs30386948 SNP Detail

Summary

• ID
  rs30386948
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124195428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGCCGAGGAT TCCAAATAAA AATCAACATA CAGGCGCGGG GAGTGATGGC GTCACCGACG
  CGACAGATGT GGGGTGGAGT CGGGCGAATC CCGGAAGAAC GTGCGGCGTA TAACCTCAGT
  CGGCCGTGGG TTCCACGAGA GGCTGCGTTC CGGGTGATGG CGACACGGGT TACGCGACAA
  CGGAAGGGGC GTGGTTGCAT CCGCAAACGC TCGGCAGTCA CGGTTTCAAA ATAAAAAATG
  GAAAAAAAAA AAAAATCCTT GGCCCGGGCG CAGGCTGATG GCATCAGCAA GTCAGGTCGC
  M
  GCGTGGAGGC CGTGCGCGCA TGCGCAGTGA CTTCCCCCGG CCACGGGCTC GCATGCGCTG
  GGGGTGTGCG CCGGCTTGGG GTCCCGATGC GTATGCGCGT TGGGTTTCTG TTGCAGGCAG
  CGCACATGCG CATTGCGTTT ACTTCCAAGT TGGCTGCACA TGCGTGTCGC AGAAGTGCGG
  GTCTGGCGAG TACAAAGAAG CCTGGCTTCG CGCATGCGTA TCGTGACGTA TGACAGCGAG
  TATGGCCTGG TGCCATCAGT CATCCTGGAA GCTCCGCTCA CTTTTAAAAA ATAATCTCAT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46402580	mCV24427299	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss134041019	ENSMUSSNP2392786	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30386948					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124195428 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	within coordinates
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	within coordinates
Tssr3090	transcription start site region 3090	1774 bp upstream
Tssr3091	transcription start site region 3091	1291 bp downstream
Tssr3092	transcription start site region 3092	1263 bp downstream
Tssr3093	transcription start site region 3093	1243 bp downstream
Tssr3094	transcription start site region 3094	1191 bp upstream
Tssr3095	transcription start site region 3095	990 bp upstream
Tssr3096	transcription start site region 3096	910 bp upstream
Tssr3097	transcription start site region 3097	834 bp upstream
Tssr3098	transcription start site region 3098	483 bp upstream
Tssr3099	transcription start site region 3099	380 bp upstream
Tssr3100	transcription start site region 3100	355 bp upstream
Tssr3101	transcription start site region 3101	243 bp upstream
Tssr3102	transcription start site region 3102	100 bp upstream
Tssr3103	transcription start site region 3103	58 bp upstream
Tssr3104	transcription start site region 3104	within coordinates
Tssr3105	transcription start site region 3105	73 bp downstream