rs30387122 SNP Detail

Summary

• ID
  rs30387122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:65333876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT GCACACTTCC TTCTGAAAGC
  Y
  ACTAGCCTAT TTTAGACCTC CCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39179889	mCV24366941	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss324656075	CHEV_14_65715264	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30387122					SNP	T	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:65333876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6626	CpG island 6626	969 bp proximal
Extl3	exostosin-like glycosyltransferase 3	within coordinates
Rr369853	regulatory region 369853	1054 bp upstream
Rr404153	regulatory region 404153	1580 bp upstream
Tssr129239	transcription start site region 129239	1604 bp downstream