rs30387505 SNP Detail

Summary

• ID
  rs30387505
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:51658348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCACTCTT ACATATATAT
  CCCATTAGCT AACTCAGTTC CCAAGTCAGC CACTAGTTAT GGATGTGGGC TAGGTCAAGC
  CACCACCTCA AGCCTCCCAT GTCTAAACCC ATCCAGTGAA GAAAGCAGCA ACAGCATCGC
  CAACTATCTA TCCATTGGCA CTGCTTGCAA CTGGGATTGC ATGCAAAGCA TATCGAAATT
  S
  CCAGAGGAGA GCTGTGATGT CTATAAATCA TAATTGATAG ATAATATCTC ACACTTACTG
  AACTTTTCTA CTACTGCCTT CTTTCTATGT TTACTTTAAT GCATACAGGC AAAAAAAAAG
  GAGCATTTAA AGAAGCTAGA GGAGTGGTGA GTCAAAGTAG ACTTCATGAG CTAGGGAAAG
  ACAAGAGTCT CCTGCTCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46943506	NES10933260	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30387505					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46943506	NES10933260	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:51658348 () rs orientation: forward

Symbol	Name	Function Class
Gpc3	glypican 3	within coordinates
Rr5963	regulatory region 5963	253 bp proximal
Tssr163364	transcription start site region 163364	350 bp upstream