rs30388228 SNP Detail

Summary

• ID
  rs30388228
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3770639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAA GGAATGGTTA CTAAGTATGG
  W
  GAGGAACTGG CCCTCCCTTG TACTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss39179799	mCV24347116	ABI	CRAMUS_MOUSE	f	SNP	A	A	T					T		A
ss51192218	NES14311512	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	T	A		T		T	A	T	T	T
ss139182371	ENSMUSSNP6006643	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30388228					SNP	A	A	T	T	T	T	A	T	T	A	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51192218	NES14311512	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3770639 () rs orientation: forward

Symbol	Name	Function Class
6820402I19Rik	RIKEN cDNA 6820402I19 gene	770 bp downstream
Rr389165	regulatory region 389165	1516 bp upstream
Ube2e2	ubiquitin-conjugating enzyme E2E 2	within coordinates