rs30388285 SNP Detail

Summary

• ID
  rs30388285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90264039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATCTTGA AGAGCTACCA
  CAAGTAATAA CTTTAAGAAG CTATTTATCA AAACCAGGAA GAAGAAAAAC TACAGAAGCA
  AAAAGAAAAA ATAATTGAAA TTCATATATA TATTTATATA TGTATATGTA TACATATATA
  TGCATTAAGT AGGTCTAACA GTATTGACTT ACAAGCAATA AAATTATAAA ACTATTTTGA
  Y
  GACTCAATAA AACTGTATGG AAACATCTCA TAATATGAAG TGGGAGAATA GGAGTCTTTG
  AGATATTCTT ATAGTAGTGT TCTCTCGGTT ATGAGACTAT GAAGGAGTTA ACAGTAAGGA
  AAGGATGATC TCTCATAAAA AGATAGTATA TTGATAAACT TCATTTCATC TCCAAATTTG
  CAAGAATAAC CACCCTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47941519	NES12018824	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30388285					SNP	T	T	T	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47941519	NES12018824	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90264039 () rs orientation: forward

Symbol	Name	Function Class
Anks1b	ankyrin repeat and sterile alpha motif domain containing 1B	within coordinates
C230047L17Rik	RIKEN cDNA C230047L17 gene	122 bp downstream