rs30388858 SNP Detail

Summary

• ID
  rs30388858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:79203703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATT TGAGCCCCCT TTTTATCATT
  R
  AACTCCAGCT GTGCCAAAGC CTGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39180210	mCV24524214	ABI	CRAMUS_MOUSE	f	SNP		G					A
ss49326432	NES12590156	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	G	G	G		G	A	G	G		A
ss139803526	ENSMUSSNP4918630	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss324676650	CHEV_14_79366070	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30388858					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49326432	NES12590156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79203703 () rs orientation: forward

Symbol	Name	Function Class
Gm6997	predicted gene 6997	within coordinates
Tssr126779	transcription start site region 126779	601 bp upstream
Tssr129883	transcription start site region 129883	293 bp downstream
Vwa8	von Willebrand factor A domain containing 8	within coordinates